PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G132200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 172aa    MW: 18984.7 Da    PI: 8.3654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G132200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.29e-41111101100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l
  Manes.07G132200.1.p  11 SCAACKFLKRRCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 100
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +la ++++
  Manes.07G132200.1.p 101 QFDLAIARAR 110
                          ***9998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.64310111IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRSHEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILTEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QFDLAIARAR LARYTANSSS  120
SAAILNDRSG LTTFSEFPAI CGGLIQSFGL SSSELNQDGL MNDLSQFPYI F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448261e-107EF144826.1 Populus trichocarpa clone WS01118_L02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528321.12e-94PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL85e-68LBD21_ARATH; LOB domain-containing protein 21
TrEMBLB9SQQ22e-94B9SQQ2_RICCO; LOB domain-containing protein, putative
STRINGVIT_13s0067g01450.t012e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-69LOB domain-containing protein 21